cisbp-rna pabp_2_M148 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.950326

Neutral set average density: 0.000389145

Different set average density: 0.000382294

Presence of motif

           motif_present
gene_set    absent present
  different    975      19
  neutral     1918      35

Fisher's exact test: p=0.884621

Binomial GLM: p=0.819346

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1965  -0.1965  -0.1902  -0.1902   2.8361  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -4.00369    0.17054 -23.476   <2e-16 ***
differentTRUE  0.06569    0.28763   0.228    0.819    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 538.96  on 2946  degrees of freedom
Residual deviance: 538.90  on 2945  degrees of freedom
AIC: 542.9

Number of Fisher Scoring iterations: 6