cisbp-rna rsp_3_M102 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.116614

Neutral set average density: 4.09626e-05

Different set average density: 0.000140845

Presence of motif

           motif_present
gene_set    absent present
  different    988       6
  neutral     1949       4

Fisher's exact test: p=0.0965488

Binomial GLM: p=0.0934289

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-0.110  -0.110  -0.064  -0.064   3.519  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -6.1888     0.5005 -12.365   <2e-16 ***
differentTRUE   1.0849     0.6467   1.678   0.0934 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 133.69  on 2946  degrees of freedom
Residual deviance: 130.80  on 2945  degrees of freedom
AIC: 134.8

Number of Fisher Scoring iterations: 9