cisbp-rna rsp_3_M102 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.970618

Neutral set average density: 0.000143369

Different set average density: 0.000140845

Presence of motif

           motif_present
gene_set    absent present
  different    987       7
  neutral     1941      12

Fisher's exact test: p=0.809449

Binomial GLM: p=0.773573

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1189  -0.1189  -0.1110  -0.1110   3.1913  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.0861     0.2896 -17.564   <2e-16 ***
differentTRUE   0.1373     0.4772   0.288    0.774    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 229.55  on 2946  degrees of freedom
Residual deviance: 229.47  on 2945  degrees of freedom
AIC: 233.47

Number of Fisher Scoring iterations: 8