cisbp-rna rsp_3_M102 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00967402

Neutral set average density: 0.000946237

Different set average density: 0.00077666

Presence of motif

           motif_present
gene_set    absent present
  different    718     276
  neutral     1358     595

Fisher's exact test: p=0.135136

Binomial GLM: p=0.12905

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8525  -0.8525  -0.8066   1.5418   1.6008  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.82521    0.04916 -16.785   <2e-16 ***
differentTRUE -0.13086    0.08621  -1.518    0.129    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3578.0  on 2946  degrees of freedom
Residual deviance: 3575.6  on 2945  degrees of freedom
AIC: 3579.6

Number of Fisher Scoring iterations: 4