cisbp-rna rsp_3_M102 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.976758

Neutral set average density: 8.19252e-05

Different set average density: 8.04829e-05

Presence of motif

           motif_present
gene_set    absent present
  different    990       4
  neutral     1945       8

Fisher's exact test: p=1

Binomial GLM: p=0.976812

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0906  -0.0906  -0.0906  -0.0898   3.3213  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -5.49358    0.35428 -15.506   <2e-16 ***
differentTRUE -0.01783    0.61361  -0.029    0.977    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 156.04  on 2946  degrees of freedom
Residual deviance: 156.04  on 2945  degrees of freedom
AIC: 160.04

Number of Fisher Scoring iterations: 8