cisbp-rna rsp_3_M103 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.290387

Neutral set average density: 2.04813e-05

Different set average density: 6.03622e-05

Presence of motif

           motif_present
gene_set    absent present
  different    991       3
  neutral     1951       2

Fisher's exact test: p=0.343213

Binomial GLM: p=0.235949

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0778  -0.0778  -0.0453  -0.0453   3.7105  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -6.8830     0.7074  -9.730   <2e-16 ***
differentTRUE   1.0828     0.9137   1.185    0.236    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 73.783  on 2946  degrees of freedom
Residual deviance: 72.344  on 2945  degrees of freedom
AIC: 76.344

Number of Fisher Scoring iterations: 9