cisbp-rna rsp_3_M103 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0030884

Neutral set average density: 0.000684076

Different set average density: 0.000513078

Presence of motif

           motif_present
gene_set    absent present
  different    807     187
  neutral     1523     430

Fisher's exact test: p=0.0443701

Binomial GLM: p=0.0434208

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7052  -0.7052  -0.7052  -0.6456   1.8279  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.26465    0.05461  -23.16   <2e-16 ***
differentTRUE -0.19756    0.09782   -2.02   0.0434 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3024.3  on 2946  degrees of freedom
Residual deviance: 3020.2  on 2945  degrees of freedom
AIC: 3024.2

Number of Fisher Scoring iterations: 4