cisbp-rna rsp_3_M103 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.776407

Neutral set average density: 3.0722e-05

Different set average density: 4.02414e-05

Presence of motif

           motif_present
gene_set    absent present
  different    992       2
  neutral     1950       3

Fisher's exact test: p=1

Binomial GLM: p=0.76728

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0635  -0.0635  -0.0554  -0.0554   3.5996  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -6.4770     0.5778 -11.210   <2e-16 ***
differentTRUE   0.2704     0.9137   0.296    0.767    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 73.783  on 2946  degrees of freedom
Residual deviance: 73.697  on 2945  degrees of freedom
AIC: 77.697

Number of Fisher Scoring iterations: 9