cisbp-rna rsp_3_M103 3' UTR

[CSV file]

Density of motif

t-test: p=0.579853

Neutral set average density: 2.99929e-05

Different set average density: 2.11312e-05

Presence of motif

           motif_present
gene_set    absent present
  different    985       9
  neutral     1944       9

Fisher's exact test: p=0.208891

Binomial GLM: p=0.150642

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1349  -0.1349  -0.0961  -0.0961   3.2802  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.3753     0.3341 -16.089   <2e-16 ***
differentTRUE   0.6799     0.4730   1.437    0.151    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 219.42  on 2946  degrees of freedom
Residual deviance: 217.40  on 2945  degrees of freedom
AIC: 221.4

Number of Fisher Scoring iterations: 8

Binomial GLM adjusted for length: p=0.558828

Call:
glm(formula = motif_present ~ length + different, family = binomial, 
    data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4271  -0.1148  -0.0902  -0.0775   3.4578  

Coefficients:
                Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -6.1000056  0.4441205 -13.735  < 2e-16 ***
length         0.0029580  0.0009155   3.231  0.00123 ** 
differentTRUE  0.2876031  0.4919798   0.585  0.55883    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 219.42  on 2946  degrees of freedom
Residual deviance: 208.78  on 2944  degrees of freedom
AIC: 214.78

Number of Fisher Scoring iterations: 8