cisbp-rna rsp_3_M104 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.0875635

Neutral set average density: 2.04813e-05

Different set average density: 0.000120724

Presence of motif

           motif_present
gene_set    absent present
  different    989       5
  neutral     1951       2

Fisher's exact test: p=0.047389

Binomial GLM: p=0.0567473

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1004  -0.1004  -0.0453  -0.0453   3.7105  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -6.8830     0.7074  -9.730   <2e-16 ***
differentTRUE   1.5957     0.8375   1.905   0.0567 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 98.580  on 2946  degrees of freedom
Residual deviance: 94.432  on 2945  degrees of freedom
AIC: 98.432

Number of Fisher Scoring iterations: 9