cisbp-rna rsp_3_M104 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.622134

Neutral set average density: 9.21659e-05

Different set average density: 0.000120724

Presence of motif

           motif_present
gene_set    absent present
  different    988       6
  neutral     1944       9

Fisher's exact test: p=0.593695

Binomial GLM: p=0.607635

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1100  -0.1100  -0.0961  -0.0961   3.2802  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.3753     0.3341 -16.089   <2e-16 ***
differentTRUE   0.2714     0.5285   0.513    0.608    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 188.34  on 2946  degrees of freedom
Residual deviance: 188.08  on 2945  degrees of freedom
AIC: 192.08

Number of Fisher Scoring iterations: 8