cisbp-rna rsp_3_M104 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0895905

Neutral set average density: 0.000651306

Different set average density: 0.000555332

Presence of motif

           motif_present
gene_set    absent present
  different    785     209
  neutral     1517     436

Fisher's exact test: p=0.450948

Binomial GLM: p=0.420305

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7108  -0.7108  -0.7108  -0.6871   1.7660  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.24685    0.05434 -22.946   <2e-16 ***
differentTRUE -0.07650    0.09493  -0.806     0.42    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3097.1  on 2946  degrees of freedom
Residual deviance: 3096.5  on 2945  degrees of freedom
AIC: 3100.5

Number of Fisher Scoring iterations: 4