cisbp-rna rsp_3_M105 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.581243

Neutral set average density: 7.16846e-05

Different set average density: 0.000100604

Presence of motif

           motif_present
gene_set    absent present
  different    989       5
  neutral     1946       7

Fisher's exact test: p=0.552842

Binomial GLM: p=0.561916

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1004  -0.1004  -0.0847  -0.0847   3.3560  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.6276     0.3786  -14.86   <2e-16 ***
differentTRUE   0.3404     0.5868    0.58    0.562    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 156.04  on 2946  degrees of freedom
Residual deviance: 155.71  on 2945  degrees of freedom
AIC: 159.71

Number of Fisher Scoring iterations: 8