cisbp-rna rsp_3_M105 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0981051

Neutral set average density: 0.000588838

Different set average density: 0.000498994

Presence of motif

           motif_present
gene_set    absent present
  different    809     185
  neutral     1558     395

Fisher's exact test: p=0.303912

Binomial GLM: p=0.297697

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6723  -0.6723  -0.6723  -0.6418   1.8338  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.37227    0.05633 -24.360   <2e-16 ***
differentTRUE -0.10317    0.09907  -1.041    0.298    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2923.1  on 2946  degrees of freedom
Residual deviance: 2922.0  on 2945  degrees of freedom
AIC: 2926

Number of Fisher Scoring iterations: 4