cisbp-rna rsp_3_M106 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.631027

Neutral set average density: 4.09626e-05

Different set average density: 6.03622e-05

Presence of motif

           motif_present
gene_set    absent present
  different    991       3
  neutral     1949       4

Fisher's exact test: p=0.694313

Binomial GLM: p=0.61129

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0778  -0.0778  -0.0640  -0.0640   3.5188  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -6.1888     0.5005 -12.365   <2e-16 ***
differentTRUE   0.3887     0.7648   0.508    0.611    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 98.580  on 2946  degrees of freedom
Residual deviance: 98.328  on 2945  degrees of freedom
AIC: 102.33

Number of Fisher Scoring iterations: 9