cisbp-rna rsp_3_M106 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=3.59985e-06

Neutral set average density: 0.000538658

Different set average density: 0.000241449

Presence of motif

           motif_present
gene_set    absent present
  different    882     112
  neutral     1705     248

Fisher's exact test: p=0.284271

Binomial GLM: p=0.262369

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.5212  -0.5212  -0.5212  -0.4890   2.0896  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.92789    0.06796 -28.367   <2e-16 ***
differentTRUE -0.13580    0.12116  -1.121    0.262    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2187.9  on 2946  degrees of freedom
Residual deviance: 2186.6  on 2945  degrees of freedom
AIC: 2190.6

Number of Fisher Scoring iterations: 4