cisbp-rna rsp_3_M154 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.167499

Neutral set average density: 1.02407e-05

Different set average density: 6.03622e-05

Presence of motif

           motif_present
gene_set    absent present
  different    991       3
  neutral     1952       1

Fisher's exact test: p=0.11451

Binomial GLM: p=0.124138

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0778  -0.0778  -0.0320  -0.0320   3.8928  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)     -7.577      1.000  -7.575  3.6e-14 ***
differentTRUE    1.777      1.155   1.538    0.124    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 60.813  on 2946  degrees of freedom
Residual deviance: 57.963  on 2945  degrees of freedom
AIC: 61.963

Number of Fisher Scoring iterations: 10