cisbp-rna rsp_3_M154 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.526648

Neutral set average density: 5.12033e-05

Different set average density: 8.04829e-05

Presence of motif

           motif_present
gene_set    absent present
  different    990       4
  neutral     1948       5

Fisher's exact test: p=0.496521

Binomial GLM: p=0.499518

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0898  -0.0898  -0.0716  -0.0716   3.4548  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -5.9651     0.4477 -13.323   <2e-16 ***
differentTRUE   0.4537     0.6719   0.675      0.5    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 122.22  on 2946  degrees of freedom
Residual deviance: 121.77  on 2945  degrees of freedom
AIC: 125.77

Number of Fisher Scoring iterations: 8