cisbp-rna rsp_3_M154 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0186747

Neutral set average density: 0.000491551

Different set average density: 0.000376258

Presence of motif

           motif_present
gene_set    absent present
  different    855     139
  neutral     1628     325

Fisher's exact test: p=0.0614275

Binomial GLM: p=0.0614484

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6034  -0.6034  -0.6034  -0.5489   1.9836  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.61128    0.06076  -26.52   <2e-16 ***
differentTRUE -0.20535    0.10980   -1.87   0.0614 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2566.3  on 2946  degrees of freedom
Residual deviance: 2562.8  on 2945  degrees of freedom
AIC: 2566.8

Number of Fisher Scoring iterations: 4