cisbp-rna rsp_3_M154 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.535899

Neutral set average density: 2.04813e-05

Different set average density: 4.02414e-05

Presence of motif

           motif_present
gene_set    absent present
  different    992       2
  neutral     1951       2

Fisher's exact test: p=0.607129

Binomial GLM: p=0.499112

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0635  -0.0635  -0.0453  -0.0453   3.7105  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -6.8830     0.7074  -9.730   <2e-16 ***
differentTRUE   0.6764     1.0007   0.676    0.499    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 60.813  on 2946  degrees of freedom
Residual deviance: 60.364  on 2945  degrees of freedom
AIC: 64.364

Number of Fisher Scoring iterations: 9