cisbp-rna rsp_3_M272 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.69264

Neutral set average density: 3.0722e-05

Different set average density: 2.01207e-05

Presence of motif

           motif_present
gene_set    absent present
  different    993       1
  neutral     1950       3

Fisher's exact test: p=1

Binomial GLM: p=0.713768

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.0554  -0.0554  -0.0554  -0.0449   3.7153  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -6.4770     0.5778 -11.210   <2e-16 ***
differentTRUE  -0.4238     1.1553  -0.367    0.714    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 60.813  on 2946  degrees of freedom
Residual deviance: 60.669  on 2945  degrees of freedom
AIC: 64.669

Number of Fisher Scoring iterations: 9