cisbp-rna rsp_3_M272 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.436617

Neutral set average density: 0.000227343

Different set average density: 0.000207243

Presence of motif

           motif_present
gene_set    absent present
  different    896      98
  neutral     1749     204

Fisher's exact test: p=0.65317

Binomial GLM: p=0.619778

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4697  -0.4697  -0.4697  -0.4556   2.1526  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.14868    0.07398 -29.044   <2e-16 ***
differentTRUE -0.06429    0.12958  -0.496     0.62    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1947.9  on 2946  degrees of freedom
Residual deviance: 1947.7  on 2945  degrees of freedom
AIC: 1951.7

Number of Fisher Scoring iterations: 4