cisbp-rna rsp_3_M273 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0343796

Neutral set average density: 2.86738e-05

Different set average density: 1.20724e-05

Presence of motif

           motif_present
gene_set    absent present
  different    988       6
  neutral     1928      25

Fisher's exact test: p=0.124786

Binomial GLM: p=0.0963449

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1605  -0.1605  -0.1605  -0.1100   3.1969  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.3454     0.2013 -21.587   <2e-16 ***
differentTRUE  -0.7586     0.4562  -1.663   0.0963 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 344.06  on 2946  degrees of freedom
Residual deviance: 340.87  on 2945  degrees of freedom
AIC: 344.87

Number of Fisher Scoring iterations: 7