cisbp-rna rsp_3_M351 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0216386

Neutral set average density: 1.6385e-05

Different set average density: 4.02414e-06

Presence of motif

           motif_present
gene_set    absent present
  different    992       2
  neutral     1939      14

Fisher's exact test: p=0.108419

Binomial GLM: p=0.0919202

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1200  -0.1200  -0.1200  -0.0635   3.5238  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.9309     0.2682 -18.383   <2e-16 ***
differentTRUE  -1.2757     0.7569  -1.685   0.0919 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 198.82  on 2946  degrees of freedom
Residual deviance: 195.00  on 2945  degrees of freedom
AIC: 199

Number of Fisher Scoring iterations: 9