cisbp-rna sap_49_M261 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.626669

Neutral set average density: 0.000962622

Different set average density: 0.00104628

Presence of motif

           motif_present
gene_set    absent present
  different    942      52
  neutral     1860      93

Fisher's exact test: p=0.589415

Binomial GLM: p=0.577572

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3278  -0.3278  -0.3124  -0.3124   2.4676  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.99573    0.10625 -28.196   <2e-16 ***
differentTRUE  0.09897    0.17771   0.557    0.578    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1156.2  on 2946  degrees of freedom
Residual deviance: 1155.9  on 2945  degrees of freedom
AIC: 1159.9

Number of Fisher Scoring iterations: 5