cisbp-rna sap_49_M261 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.485835

Neutral set average density: 0.000348182

Different set average density: 0.00028169

Presence of motif

           motif_present
gene_set    absent present
  different    980      14
  neutral     1919      34

Fisher's exact test: p=0.542096

Binomial GLM: p=0.501036

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1874  -0.1874  -0.1874  -0.1684   2.9198  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.0332     0.1730 -23.312   <2e-16 ***
differentTRUE  -0.2153     0.3200  -0.673    0.501    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 490.48  on 2946  degrees of freedom
Residual deviance: 490.01  on 2945  degrees of freedom
AIC: 494.01

Number of Fisher Scoring iterations: 7