cisbp-rna sap_49_M261 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0919975

Neutral set average density: 0.000658474

Different set average density: 0.000585513

Presence of motif

           motif_present
gene_set    absent present
  different    739     255
  neutral     1427     526

Fisher's exact test: p=0.480072

Binomial GLM: p=0.457043

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7922  -0.7922  -0.7700   1.6198   1.6495  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.99803    0.05101 -19.566   <2e-16 ***
differentTRUE -0.06601    0.08875  -0.744    0.457    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3408.1  on 2946  degrees of freedom
Residual deviance: 3407.6  on 2945  degrees of freedom
AIC: 3411.6

Number of Fisher Scoring iterations: 4