cisbp-rna sap_49_M261 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.905392

Neutral set average density: 0.000706605

Different set average density: 0.000724346

Presence of motif

           motif_present
gene_set    absent present
  different    959      35
  neutral     1886      67

Fisher's exact test: p=0.915284

Binomial GLM: p=0.89888

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2677  -0.2677  -0.2642  -0.2642   2.5971  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -3.33752    0.12432 -26.846   <2e-16 ***
differentTRUE  0.02698    0.21230   0.127    0.899    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 886.60  on 2946  degrees of freedom
Residual deviance: 886.58  on 2945  degrees of freedom
AIC: 890.58

Number of Fisher Scoring iterations: 6