cisbp-rna sup_12_M170 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.665062

Neutral set average density: 0.000430108

Different set average density: 0.000362173

Presence of motif

           motif_present
gene_set    absent present
  different    982      12
  neutral     1923      30

Fisher's exact test: p=0.515979

Binomial GLM: p=0.477459

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1760  -0.1760  -0.1760  -0.1559   2.9722  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.1604     0.1840  -22.61   <2e-16 ***
differentTRUE  -0.2442     0.3438   -0.71    0.477    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 440.47  on 2946  degrees of freedom
Residual deviance: 439.95  on 2945  degrees of freedom
AIC: 443.95

Number of Fisher Scoring iterations: 7