cisbp-rna sup_12_M170 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.32484

Neutral set average density: 0.000166923

Different set average density: 0.000144869

Presence of motif

           motif_present
gene_set    absent present
  different    927      67
  neutral     1805     148

Fisher's exact test: p=0.453845

Binomial GLM: p=0.408678

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3970  -0.3970  -0.3970  -0.3736   2.3225  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -2.5011     0.0855 -29.252   <2e-16 ***
differentTRUE  -0.1262     0.1527  -0.826    0.409    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1539.6  on 2946  degrees of freedom
Residual deviance: 1538.9  on 2945  degrees of freedom
AIC: 1542.9

Number of Fisher Scoring iterations: 5