cisbp-rna sup_12_M170 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.47475

Neutral set average density: 0.000296979

Different set average density: 0.000382294

Presence of motif

           motif_present
gene_set    absent present
  different    977      17
  neutral     1929      24

Fisher's exact test: p=0.319117

Binomial GLM: p=0.293669

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1857  -0.1857  -0.1573  -0.1573   2.9662  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.3867     0.2054  -21.36   <2e-16 ***
differentTRUE   0.3354     0.3194    1.05    0.294    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 431.97  on 2946  degrees of freedom
Residual deviance: 430.90  on 2945  degrees of freedom
AIC: 434.9

Number of Fisher Scoring iterations: 7