cisbp-rna tiar_1_M219 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=7.80274e-11

Neutral set average density: 0.0105172

Different set average density: 0.00549296

Presence of motif

           motif_present
gene_set    absent present
  different    853     141
  neutral     1496     457

Fisher's exact test: p=2.23758e-09

Binomial GLM: p=5.76126e-09

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7302  -0.7302  -0.7302  -0.5531   1.9764  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.18587    0.05345 -22.188  < 2e-16 ***
differentTRUE -0.61413    0.10546  -5.824 5.76e-09 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2973.1  on 2946  degrees of freedom
Residual deviance: 2936.8  on 2945  degrees of freedom
AIC: 2940.8

Number of Fisher Scoring iterations: 4