cisbp-rna tiar_2_M219 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.79048

Neutral set average density: 0.0084895

Different set average density: 0.00826962

Presence of motif

           motif_present
gene_set    absent present
  different    799     195
  neutral     1559     394

Fisher's exact test: p=0.733338

Binomial GLM: p=0.721031

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6713  -0.6713  -0.6713  -0.6609   1.8049  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.37545    0.05639 -24.393   <2e-16 ***
differentTRUE -0.03491    0.09777  -0.357    0.721    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2948.3  on 2946  degrees of freedom
Residual deviance: 2948.1  on 2945  degrees of freedom
AIC: 2952.1

Number of Fisher Scoring iterations: 4