cisbp-rna tiar_2_M219 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.644585

Neutral set average density: 0.00351767

Different set average density: 0.00362374

Presence of motif

           motif_present
gene_set    absent present
  different    496     498
  neutral      962     991

Fisher's exact test: p=0.755317

Binomial GLM: p=0.74179

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.190  -1.190   1.165   1.165   1.176  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)
(Intercept)    0.02970    0.04526   0.656    0.512
differentTRUE -0.02568    0.07793  -0.329    0.742

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4085.1  on 2946  degrees of freedom
Residual deviance: 4085.0  on 2945  degrees of freedom
AIC: 4089

Number of Fisher Scoring iterations: 3