cisbp-rna tiar_2_M219 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00584355

Neutral set average density: 0.0138556

Different set average density: 0.0109859

Presence of motif

           motif_present
gene_set    absent present
  different    767     227
  neutral     1403     550

Fisher's exact test: p=0.00195975

Binomial GLM: p=0.00195791

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8133  -0.8133  -0.7201   1.5920   1.7186  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.93645    0.05031 -18.614  < 2e-16 ***
differentTRUE -0.28109    0.09077  -3.097  0.00196 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3399.9  on 2946  degrees of freedom
Residual deviance: 3390.2  on 2945  degrees of freedom
AIC: 3394.2

Number of Fisher Scoring iterations: 4