cisbp-rna tiar_3_M005 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=2.83729e-09

Neutral set average density: 0.00920635

Different set average density: 0.00490946

Presence of motif

           motif_present
gene_set    absent present
  different    873     121
  neutral     1535     418

Fisher's exact test: p=3.53518e-10

Binomial GLM: p=1.43354e-09

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6940  -0.6940  -0.6940  -0.5095   2.0523  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.30080    0.05517 -23.578  < 2e-16 ***
differentTRUE -0.67534    0.11160  -6.052 1.43e-09 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2804.1  on 2946  degrees of freedom
Residual deviance: 2764.5  on 2945  degrees of freedom
AIC: 2768.5

Number of Fisher Scoring iterations: 4