cisbp-rna tiar_3_M005 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.802052

Neutral set average density: 0.00763953

Different set average density: 0.00744467

Presence of motif

           motif_present
gene_set    absent present
  different    817     177
  neutral     1585     368

Fisher's exact test: p=0.514361

Binomial GLM: p=0.493491

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.6462  -0.6462  -0.6462  -0.6263   1.8577  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.46026    0.05786 -25.236   <2e-16 ***
differentTRUE -0.06923    0.10110  -0.685    0.493    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 2822.0  on 2946  degrees of freedom
Residual deviance: 2821.5  on 2945  degrees of freedom
AIC: 2825.5

Number of Fisher Scoring iterations: 4