cisbp-rna tiar_3_M005 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.59444

Neutral set average density: 0.00310599

Different set average density: 0.00321932

Presence of motif

           motif_present
gene_set    absent present
  different    531     463
  neutral     1031     922

Fisher's exact test: p=0.754943

Binomial GLM: p=0.745982

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
   Min      1Q  Median      3Q     Max  
-1.130  -1.130  -1.120   1.225   1.236  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)  
(Intercept)   -0.11174    0.04533  -2.465   0.0137 *
differentTRUE -0.02530    0.07809  -0.324   0.7460  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 4074.8  on 2946  degrees of freedom
Residual deviance: 4074.7  on 2945  degrees of freedom
AIC: 4078.7

Number of Fisher Scoring iterations: 3