cisbp-rna tiar_3_M005 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.0127205

Neutral set average density: 0.0122683

Different set average density: 0.00985915

Presence of motif

           motif_present
gene_set    absent present
  different    789     205
  neutral     1433     520

Fisher's exact test: p=0.000348231

Binomial GLM: p=0.000359839

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7869  -0.7869  -0.6797  -0.6797   1.7769  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.01370    0.05119 -19.801  < 2e-16 ***
differentTRUE -0.33406    0.09363  -3.568  0.00036 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3288.3  on 2946  degrees of freedom
Residual deviance: 3275.3  on 2945  degrees of freedom
AIC: 3279.3

Number of Fisher Scoring iterations: 4