cisbp-rna unc_75_M079 50 bases upstrand from poly(A) site

[CSV file]

Density of motif

t-test: p=0.000272577

Neutral set average density: 0.0009319

Different set average density: 0.000422535

Presence of motif

           motif_present
gene_set    absent present
  different    973      21
  neutral     1870      83

Fisher's exact test: p=0.00292185

Binomial GLM: p=0.00356955

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2947  -0.2947  -0.2947  -0.2067   2.7775  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.1149     0.1122 -27.768  < 2e-16 ***
differentTRUE  -0.7210     0.2474  -2.914  0.00357 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 899.87  on 2946  degrees of freedom
Residual deviance: 890.25  on 2945  degrees of freedom
AIC: 894.25

Number of Fisher Scoring iterations: 6