cisbp-rna unc_75_M079 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.85002

Neutral set average density: 0.000225294

Different set average density: 0.000241449

Presence of motif

           motif_present
gene_set    absent present
  different    982      12
  neutral     1932      21

Fisher's exact test: p=0.715673

Binomial GLM: p=0.747662

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1559  -0.1559  -0.1470  -0.1470   3.0109  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.5218     0.2194 -20.610   <2e-16 ***
differentTRUE   0.1171     0.3640   0.322    0.748    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 362.1  on 2946  degrees of freedom
Residual deviance: 362.0  on 2945  degrees of freedom
AIC: 366

Number of Fisher Scoring iterations: 7