cisbp-rna unc_75_M079 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.349262

Neutral set average density: 0.000230415

Different set average density: 0.000205231

Presence of motif

           motif_present
gene_set    absent present
  different    901      93
  neutral     1752     201

Fisher's exact test: p=0.436095

Binomial GLM: p=0.423018

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4661  -0.4661  -0.4661  -0.4432   2.1768  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.16521    0.07447 -29.076   <2e-16 ***
differentTRUE -0.10570    0.13192  -0.801    0.423    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1913.0  on 2946  degrees of freedom
Residual deviance: 1912.3  on 2945  degrees of freedom
AIC: 1916.3

Number of Fisher Scoring iterations: 4