cisbp-rna unc_75_M079 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.00341351

Neutral set average density: 0.00114695

Different set average density: 0.000643863

Presence of motif

           motif_present
gene_set    absent present
  different    963      31
  neutral     1860      93

Fisher's exact test: p=0.0411243

Binomial GLM: p=0.0370374

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.3124  -0.3124  -0.3124  -0.2517   2.6335  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -2.9957     0.1063 -28.194   <2e-16 ***
differentTRUE  -0.4403     0.2112  -2.085    0.037 *  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1028.4  on 2946  degrees of freedom
Residual deviance: 1023.8  on 2945  degrees of freedom
AIC: 1027.8

Number of Fisher Scoring iterations: 6