custom Alt_PAS_AAUGAA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.226997

Neutral set average density: 0.000378904

Different set average density: 0.000261569

Presence of motif

           motif_present
gene_set    absent present
  different    981      13
  neutral     1918      35

Fisher's exact test: p=0.359585

Binomial GLM: p=0.328122

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.1902  -0.1902  -0.1902  -0.1623   2.9451  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.0037     0.1706 -23.473   <2e-16 ***
differentTRUE  -0.3199     0.3272  -0.978    0.328    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 490.48  on 2946  degrees of freedom
Residual deviance: 489.48  on 2945  degrees of freedom
AIC: 493.48

Number of Fisher Scoring iterations: 7