custom Alt_PAS_AAUGAA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.71162

Neutral set average density: 0.000641065

Different set average density: 0.000657948

Presence of motif

           motif_present
gene_set    absent present
  different    723     271
  neutral     1439     514

Fisher's exact test: p=0.596999

Binomial GLM: p=0.583217

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.7979  -0.7816  -0.7816   1.6122   1.6340  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -1.02948    0.05139 -20.035   <2e-16 ***
differentTRUE  0.04819    0.08783   0.549    0.583    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3416.3  on 2946  degrees of freedom
Residual deviance: 3416.0  on 2945  degrees of freedom
AIC: 3420

Number of Fisher Scoring iterations: 4