custom Mex_5_PAS_UAAUAAA 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.0079557

Neutral set average density: 0.000184332

Different set average density: 0.000462777

Presence of motif

           motif_present
gene_set    absent present
  different    971      23
  neutral     1935      18

Fisher's exact test: p=0.00403775

Binomial GLM: p=0.00320734

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2164  -0.2164  -0.1361  -0.1361   3.0616  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -4.6775     0.2368 -19.754  < 2e-16 ***
differentTRUE   0.9347     0.3171   2.947  0.00321 ** 
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 431.97  on 2946  degrees of freedom
Residual deviance: 423.27  on 2945  degrees of freedom
AIC: 427.27

Number of Fisher Scoring iterations: 7