custom Mex_5_PAS_UAAUAAA 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.485273

Neutral set average density: 0.000149514

Different set average density: 0.00016499

Presence of motif

           motif_present
gene_set    absent present
  different    916      78
  neutral     1813     140

Fisher's exact test: p=0.503739

Binomial GLM: p=0.505882

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4043  -0.4043  -0.3857  -0.3857   2.2959  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.56110    0.08772 -29.197   <2e-16 ***
differentTRUE  0.09779    0.14699   0.665    0.506    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1554.8  on 2946  degrees of freedom
Residual deviance: 1554.4  on 2945  degrees of freedom
AIC: 1558.4

Number of Fisher Scoring iterations: 5