custom Mex_5_PAS_UAAUAAA 50 bases downstrand from stop codon

[CSV file]

Density of motif

t-test: p=5.48452e-14

Neutral set average density: 0.000809012

Different set average density: 6.03622e-05

Presence of motif

           motif_present
gene_set    absent present
  different    991       3
  neutral     1877      76

Fisher's exact test: p=1.00108e-10

Binomial GLM: p=1.10159e-05

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.2818  -0.2818  -0.2818  -0.0778   3.4068  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)    -3.2067     0.1170 -27.406  < 2e-16 ***
differentTRUE  -2.5934     0.5899  -4.396  1.1e-05 ***
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 727.68  on 2946  degrees of freedom
Residual deviance: 683.26  on 2945  degrees of freedom
AIC: 687.26

Number of Fisher Scoring iterations: 8