custom Mex_5_UAAUAW 50 bases upstrand from start codon

[CSV file]

Density of motif

t-test: p=0.210058

Neutral set average density: 0.00157706

Different set average density: 0.00187123

Presence of motif

           motif_present
gene_set    absent present
  different    904      90
  neutral     1813     140

Fisher's exact test: p=0.0810919

Binomial GLM: p=0.071771

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.4357  -0.4357  -0.3857  -0.3857   2.2959  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -2.56110    0.08772 -29.197   <2e-16 ***
differentTRUE  0.25408    0.14111   1.801   0.0718 .  
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 1614.8  on 2946  degrees of freedom
Residual deviance: 1611.6  on 2945  degrees of freedom
AIC: 1615.6

Number of Fisher Scoring iterations: 5