custom Mex_5_UAAUAW 500 bases upstrand from stop codon

[CSV file]

Density of motif

t-test: p=0.829812

Neutral set average density: 0.000856119

Different set average density: 0.000869215

Presence of motif

           motif_present
gene_set    absent present
  different    672     322
  neutral     1326     627

Fisher's exact test: p=0.900466

Binomial GLM: p=0.873475

Call:
glm(formula = motif_present ~ different, family = binomial, data = daf)

Deviance Residuals: 
    Min       1Q   Median       3Q      Max  
-0.8849  -0.8800  -0.8800   1.5015   1.5074  

Coefficients:
              Estimate Std. Error z value Pr(>|z|)    
(Intercept)   -0.74898    0.04847 -15.453   <2e-16 ***
differentTRUE  0.01327    0.08332   0.159    0.873    
---
Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1

(Dispersion parameter for binomial family taken to be 1)

    Null deviance: 3703.7  on 2946  degrees of freedom
Residual deviance: 3703.7  on 2945  degrees of freedom
AIC: 3707.7

Number of Fisher Scoring iterations: 4